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HiThrough&ML

Created2022-08-10|Updated2022-10-04
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Author: 关莹
Link: http://example.com/2022/08/10/HiThrough-ML/
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  1. 1. CNN kernel similarity
    1. 2022-08-10
      1. motif距离（相似度）
      2. motif位置
    2. 2022-08-12
      1. 第一层kernel 127 motifs, 5 bp
      2. 第二层kernel 123 motifs, 9 bp
      3. 第三层kernel 125 motifs, 13 bp
    3. 2022-08-18
  2. 2. CNN performance improvement
    1. 2022-08-18
  3. 3. Sars-cov-2 5’UTR library design
    1. Betacoronavirus 5’UTR collection and alignment
    2. HMM model construction
    3. Random library generation
    4. HMM library generation
    5. HMM & Random library comparison
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